Showing posts with label UCC. Show all posts
Showing posts with label UCC. Show all posts

Wednesday, December 22, 2010

Science Public Lecture Series Launched

University College Cork has launched its Annual Public Lecture Series from the College of Science, Engineering and Food Science.

The lecture series, organised by Prof. William Reville, comprises a selection of distinguished speakers who will discuss various aspect of science and technology, many of particular relevance to Ireland today.

The series runs weekly from January 5th until March 30th 2011 and takes place on Wednesday evenings. The location for the lectures is Boole Lecture Theatre 2 on UCC's main campus.

Highlights from the series include Professor Mark Achtman  from the Environmental Research Institute at UCC speaking on "Human Migrations from a bacterial Perspective". Prof. Achtman will explain how Heliobacter pylori, a common bacterium of human stomachs, can be used to trace human migrations over the last 80,000 years. This lecture is the first in the series and takes place on January 5th at 8pm.

"Tracking Birds: From Individuals to Populations" is the subject of Professor John O'Halloran's lecture which takes place on Wednesday 2nd February at 8pm. The scientist, Head of the School of Biological, Earth and Environmental Sciences at the university will speak on how knowledge of bird species relies on data collection both by professionals and by 'citizen science'.

Dark Matter and Dark Energy will be the subject of a talk by Professor Paul Callanan from the Department of Physics, UCC on the 23rd February. "Whistling in the Dark: How our Understanding of the Universe Continues to be Frustrated by the Mysteries of Dark Matter and Dark Energy" will look at one of the greatest challenges to modern astrophysics and the implications for our understanding of the Cosmos at large.

Full details of all of the lectures in the series can be found here (pdf). Admission is free to all lectures and all are welcome to attend.

In the following video, Prof. William Reville introduces this year's lecture series:

Tuesday, November 23, 2010

George Boole Lecture

Professor Des McHale will deliver the Annual Boole Lecture at UCC on December 7th 2010.

The Boole Lecture is an annual event that was established and is sponsored by the Boole Centre for Research in Informatics, the Cork Constraint Computation Centre, the Department of Computer Science, and The School of Mathematical Sciences.

Title: "GEORGE BOOLE — A PORTRAIT OF THE MAN AND HIS WORK"


Venue: G5 Western Gate Building, UCC at 8:00 pm

Admission is free. All are welcome

Thursday, November 18, 2010

Agriculture: Here are the questions...now what are the answers?

A multidisciplinary team of 55 agricultural and food experts from 23 countries have come together to identify the 100 "Questions of Importance" to the Future of world agriculture.

Dr. Colin Sage, from UCC's Department of Geography was the sole contibutor from Ireland.

"We need to build greater resilience and adaptability into the global food system and that is likely to involve giving more serious attention to encouraging shifts in patterns of consumption as well as to finding ways of producing more food more sustainably" said Dr. Sage.

The authors began with an initial list of 618 questions before reducing them to the top 100 over a year long period. Thirteen themes were identified as priority to global agriculture and food production.

These themes include "Climate, watersheds, water resources and aquatic ecosystems" as well as a theme on "Crop genetic improvement" and "Consumption patterns and health".

The report was published in the International Journal of Agricultural Sustainability and is free to download here.

Monday, November 8, 2010

Science Snapshot Two: Skulls and Crossbones

Science Week kicked off yesterday in Ireland. For more details of events taking place around the country, you can visit here.

Here on Communicate Science, for the duration of Science Week, along with our usual posts, we'll be posting a 'Science Snapshot' every day. If you have a Science Snapshot you'd like to share, you can email here and we'll post the best later in the week.

The next picture is a selection of skulls on display at University College Cork's Schools Open Day which took place last month.

The skulls are part of the School of Biological, Earth and Environmaental Sciences' (BEES) extensive zoological museum.
 

Wednesday, November 3, 2010

George Boole Petition

As of this evening, close to 700 people have put their names to a petition to show support for the urgent repair and/or restoration of George Boole's house at Number 5, Grenville Place, Cork.

As first reported by the Communicate Science blog, the building suffered significant structural damage last month when the roof and a number of floors began to give way. Engineers and contractors have since examined the building and have removed the roof and and number of floors from part of the house. For pictures of this work, see here.

Barry O'Sullivan of the Cork Constraint Computation Centre and the Department of Computer Science at University College Cork (where Boole worked) set up the petition which describes the house as being of "enormous importance to the legacy of George Boole and UCC, Cork and Ireland's connection with him".

As of 5pm today, the petition had been signed by 698 people, many of them academics with interests in computing, mathematics and science but many also outside of academia. A quick glance at the petition shows that those interested in supporting this cause include people from as far away as Florida, Vienna, Harvard University in the US and Uppsala University in Sweden, to name just a few.

While the details of saving, restoring and refurbishing the building (which is in private ownership) are complicated, it is great to see such support being shown for a worthy cause.

You can view and sign the petition here.

Monday, November 1, 2010

Irish Scientist Investigates The Plague

An international research team led by an Irish-based scientist have shown for the first time that Plague originated in China and stems from a single bacterium that has mutated many times.


The Plague has devastated many parts of Europe, Africa and Asia in various waves throughout history and still exists in various parts of the world, including the west coast of the USA.

Professor Mark Achtman, based at the Environmental Research Institute at University College Cork, and his team have just published the results of their studies in the scientific journal Nature Genomics. More on this story here.

Professor Achtman explains it all in this video from UCC:

Friday, October 15, 2010

Rap for Science

Second-level students in Ireland are being invited to rap about science as part of a nationwide competition being run for Science Week (7-14 November).

The Alimentary Pharmabiotic Centre (APC) at University College Cork are seeking budding rapper/scientists to compose a rap based on this year's Science Week theme: Our Place in Space". An iPad is on offer for the winner.

Entrants must video their performance and upload it to the APC's Youtube Channel by November 3rd 2010. Full details area available here.

Take a look at an example of one of last year's winning raps:



Wednesday, October 6, 2010

A Gossip on Natural History*

I was delighted to browse through a copy of the first two volumes of the Irish Naturalist recently in UCC's Boole Library. In particular, I was drawn to the regular notices submitted by the Cork Naturalist's Field Club, which had been founded around the same time as the journal. In the first edition, an important message was given pride of place in the introduction:

"As we go to press, we recieve promise of support from the new Naturalist's Field Club at Cork, a notice of the establishment of which will be found on page 24. We heartily wish the Cork society a prosperous and useful career, and hope that other centres in the south and west of Ireland may soon follow the example of that city."

The Irish Naturalist was established in April 1892 by several Dublin-based naturalists as a medium through which those interested and studying nature in Ireland could publish notes and longer articles about Irish natural history.

'the fact that no journal of the kind exists in the country, is sufficient reason for our undertaking'In the first edition, the publishers noted that "the fact that no journal of the kind exists in the country, is sufficient reason for our undertaking". The journal was established upon a wave of both scientific and amateur interest in botany, zoology and geology around the end of the 19th century and the launch happened as a number of Field Clubs were being established around the country: Belfast (1863), Dublin (1886), Cork (1892) and Limerick (1892).

The Irish Naturalist was published for 33 years and is now an important resource for 'naturalists' who wish to study the history of particular species in Ireland and study the development of science in Ireland.

During the period 1900-1922, interest in natural history began to decline, not least because of prevailing political uncertainties and the journal ceased publication in December 1924 (Wyse Jackson and Wyse Jackson, 1992). Almost immediately afterward, the Irish Naturalists' Journal was launched in Belfast in 1925. This journal continues to publish to this day.

The submitted notice in that first edition informs us that the Cork Field Club was formed on March 18th of that year (1892) and that the President, Vice President and other officers were elected. The President was Prof. Marcus Hartog of Queen's College (now UCC) and one of the Vice Presidents was Mr. Denny Lane.

Marcus Hartog had become Professor of Natural History at Queen's College in 1882 (when he was 31 years old) and he held the post for 39 years. Born in London in 1851, he graduated from Cambridge with a first-class degree in Natural Science. He worked on fungi with the famous botanist Anton de Bary, the "Father of Plant Pathology" and inspired Sir Edwin Butler, who studied under him, to pursue a career in mycology rather than medicine (Cullinane, 1995).

Throughout the editions of the Irish Naturalist for the first year, we read a number of 'proceedings' from the Cork Naturalist's Field Club:

Crawford Municipal Buildings, Cork. Now Crawford Gallery
At a meeting of the club on the 22nd of April 1892, the secretary announced "Mr. J O'Sullivan's munificent gift of his herbarium of the Co. Cork flora, containing 7,000 specimens of plants, to the museum of the society". Such was the  number of specimens collected by the club that, later the same year, the proceedings note that "The secretary gave account of negotiations carried out.... with the object of obtaining for the club, space in the Crawford Municipal Building in which to form a museum".

At the same meeting (November 2nd), Prof. Hartog "gave his Inaugural Address, entitled the "Life of a Cell", dealing with the formation and gradual development of the cell in vegetable and animal tissues, illustrating by numerous diagrams, and by the manipulation of pieces of dough, the various shapes assumed, the manner of absorbing food, and the curious process of cell-division".

By the following meeting (Nov 16th) the secretary was pleased to announce that a "large corridor" was now available in the Crawford for museum purposes.

'the following rambles have been taken by members'An important part of all Field Clubs established around this time were the organisation of regular "rambles" whereby the members would depart for some scenic, part of the city or county and observe and collect specimens for further examination. The Cork field club was no different and many of the locales visited in the first year of the club's activity are still visited by scientists and amateur naturalists to this day.

At their meeting on the 6th of May 1892, the members recorded that, "the following rambles have been taken by members of the club: - April 18th to Blarney, conducted by Mr. J O'Sullivan. April 23rd to Goulding's Glen, conducted by Mr. WJ Knight".

However, as with all field work, things didn't always go to plan, as the proceedings of the Summer meetings record:

"The uncertain weather of the past weeks, combined with the fact of many members being on holidays, has had the effect of making the excursions very small, but several have been taken:
June 29th- the club visited Killeagh, for Glenbower Woods...[which] deserves to be better known.
July 9th- a wet morning deferred many, but a party of twelve visited the beautiful grounds of Fota (A.H. Smith-Barry, Esq.), where there is a splendid collection of pines and firs from all parts of the world, the characteristics of which were pointed out by Mr. Osborne, the Steward.

The Orangery at Fota Arboretum, Cork.

July 13th - to Kinsale and the Old Head, including the unrehearsed item of the wreck of the 'City of Chicago'.
July 23rd- to Mourne Abbey, where a small party, conducted by Mr. Sullivan, of Queens's College, had a most instructive botanical ramble.
August 1st- Bantry Bay was visited by some, and botanical and entomological specimens taken.
August 10th- A very pleasant afternoon was spent by some members at Currabinny Woods, Queenstown [now Cobh] harbour, the 'take' being principally entomological".

As these records show, the history of studying the Natural Sciences in Cork and Ireland generally is rich and varied. The Irish Naturalist  allows us to get some idea of what Cork naturalists (both academic and amateur) were up to during this time, when interest in the natural world had reached a peak.

Many of the locations visited by the club in their first year are still accessible for "rambles" and they are still areas where the natural world can be enjoyed and studied at leisure.

In the second edition of the Irish Naturalist, an author notes, while discussing a newly found plant species, that he was "botanizing along the banks of the river Main, Co. Antrim" when he made the discovery. I don't believe I've ever seen the word botany used as a verb before but it conveys the enthusiasm and joy which the writer clearly derived from the study of plants. I shall be using that word more often as I revive the lost art of the "ramble".

* The title of this piece "A Gossip..." comes from the proceedings outlined above, where it was common to see this phrase used as the title for lectures, e.g. A Gossip on the Ornithology of Co. Cork.
 
Sources:
Cullinane, J.P., (1995) 150 years. A history of the Chair of Botany and Zoology (Queen's College Cork - University College Cork). Unpublished report as typed manuscript.

Wyse Jackson, P., Wyse Jackson, P. (1992). The Irish Naturalist: 33 years of natural history in Ireland 1892-1924. Irish Naturalists' Journal 24(3): 95-101

Thursday, September 9, 2010

James Watson: A Geneticist's View of Cancer

At 82 years old, you might imagine James Watson would be taking life easy. After a spectacular scientific career, during which he was part of a duo which made , as his fellow Nobel Laureate Sir Peter Medawar described it, "the greatest achievement of science in the 20th century", a relaxing retirement might be in order. Not so for Watson, it seems.

Speaking at University College Cork last night, while presenting the inaugural Cancer Lecture of the Cork Cancer Research Centre (CCRC), Watson told a packed audience of his ongoing research into finding a cure for cancer at the Cold Spring Harbor Laboratory in New York where he is now Chancellor Emeritus.

Striking a highly optimistic note, the Nobel Laureate bemoaned some pessimistic cancer researchers who he said were more interested in merely researching cancer and didn't realise that they had an obligation to cure people and to save lives.

"We are nearly there", was his message for the evening, having suggested that the medicines to do the job might already be in use for a variety of ailments, but that doctors and scientists may not have recognised their anti-cancer properties yet.

Watson explained how he initially became interested in cancer research early on in his career. So much so, that he included a whole chapter on cancer in the first edition of his seminal textbook Molecular Biology of the Gene, which was originally published in 1965. The book was based on a a ten-lecture series he had been giving at Harvard for six years to introductory biology students and its format was ground-breaking at the time.

In the preface to the 1965 edition, Watson proclaimed that "it is time to reorient our teaching and to produce the new texts that will give the biologist of the future the rigor, the perspective, and the enthusiasm that will be needed to bridge the gap between the single cell and the complexities of higher organisms. The we may expect hard facts about today's most challenging biological problems: the structure of the cell, the nature of cancer, the fundamental mechanism(s) of differentiation, and how the ability to think arises from the organization of the central nervous system".

Writing in the final chapter of the first edition, Watson explains his hopes for elucidating the causes of cancers and beginning to treat them effectively. In "A Geneticist's View of Cancer", he writes that scientists at the time were just beginning to understand the genetic makeup of the diseases.

 "If we are still a colossally long way from understanding a healthy animal cell at the molecular level, have we any chance of gaining an insight into the diseased cell?"

Even at the time, just over a decade after the publication of the double-helical structure of DNA, Watson was optimistic that "an understanding of at least some aspects of uncontrolled cell growth may soon be achieved at the molecular level. Such optimism arises from recent, spectacular results on the induction of tumors by viruses".

'Only today are we beginning to gain some confidence that we are close to understanding the essential molecular features upon which the life of even the simplest bacterial cell depends' - James Watson, 1965As a young scientist, at the time, he recognised the obstacles that lay ahead: "Only today are we beginning to gain some confidence that we are close to understanding the essential molecular features upon which the life of even the simplest bacterial cell depends. The jump to an attempt to understand the much more complex vertebrate cell with its thousandfold greater amount of DNA has only begun".

Born in Chicago in 1928, James Dewey Watson received his degree from the University of Chicago in 1947, having enrolled in university at the age of just 15. A PhD from Indiana University followed in 1950 and the young scientist then spent two years doing postdoctoral work in Copenhagen before moving to the Cavendish Laboratory at Cambridge University.

In the Spring of 1953, while still at Cambridge, Watson and his colleague Francis Crick published the results of their collaboration - the elucidation of the double helical structure of DNA.

Watson has had several high-profile roles over the years, including serving as the director, president and chancellor of Cold Spring Harbor Laboratory in New York where he focused on the study of the genetic basis for cancer. He resigned as chancellor in 2007 after a controversy erupted over comments he made in an interview regarding race and intelligence. He was also involved in the Human Genome Project and was only the second person to publish his full genome publicly online.

'I think the ethics committees are out of control' - James Watson, 2010Prior to receiving an  Honorary Doctorate from University College Cork last evening, Watson spoke to journalists telling them that he was in favour of less regulation for clinical trials as this could speed up the process of finding a cure for cancer: "We're terribly held back on clinical tests by regulations which say that no one should die unnecessarily during trials; but they are going to die anyway unless we do something radical. I think the ethics committees are out of control and that it should be put back in the hands of the doctors. There is an extraordinary amount of red tape which is slowing us down. We could go five times faster without these committees".

Speaking in an introductory address to the gathered audience, Prof. Gerald O'Sullivan of CCRC praised Watson: "His accomplishments and contributions transcend boundaries, disciplines, and generations. One of the greatest scientists ever, he is also a respected leader, a gifted administrator, a brilliant author and a beacon in the Gaelic Diaspora". Watson mentioned his mother's family during his speech who left Co. Tipperary during the famine.


Prof. O'Sullivan continued, "Hopefully mankind will also constructively use its increasing technical capability to live peacefully. If so,  the humans in future millennia  may not know of  many from our time but they will know of the structure of DNA and of Watson and Crick as by then the ramifications of its discovery will have impinged on life in ways that we cannot yet imagine".

The Inaugural Cancer Lecture of the Cork Cancer Research Centre by James Watson is available as a series of video clips here.

An edited version of this article appears on the Guardian.co.uk Science Blog. You can read it here







Parts of the post were also reported in the Wall Street Journal. You can read it here

Wednesday, September 8, 2010

Reaping what you sow: Irish education spending

University College Cork: climbed 23 places to 184th
The latest QS World University Rankings are out and they make for mixed reading for the country's third-level institutions. While TCD and UCD both dropped down the rankings, UCC and NUIG have improved their ranking since last year.

Trinity College Dublin is still Ireland's highest ranked university in 52nd place worldwide, but this is down from 43rd last year. University College Dublin remains second highest in Ireland at 114th place, but this is again down from 89th place in 2009.

On the plus side, NUI Galway increased its ranking from 243rd place, up to 232nd. At University College Cork (still ranked third in Ireland), the worldwide ranking was improved from 207nd place in 2009, up to 184th place this year.

The rise of UCC is one of the high points of the ranking system. Annual rises since 2006 have seen the university rise from 386th position to 184th.

The results come as the latest OECD (Organisation for Economic Development) reports confirm that the government spends just €12,631 for every third-level student. This figure is below that in 30 other developed countries studied.

When measured against GDP, Ireland's total spend on education is just 4.7%, which places it in 25th place out of 28 OECD countries. This is significantly less than the OECD average of 5.7% and below the EU19 average of 5.3% of GDP.

What is most disturbing about the OECD data is that the results are based on data from 2007, before the huge raft of cutbacks ordered by the Government were implemented.

Concerning too is the news that, at primary-level, just 4% of pupils time is spent on science education. This compares to 29% spent on reading and writing (including Irish). The time spent on science in primary schools here is just half of that in other EU countries.

Combined with this bad news for science, just one-eight of pupils' time at primary-level is spent learning maths. This is the lowest of all countries measured. And we wonder why maths achievement at Leaving Certificate level is so low!

One wonders whether Irish universities can sustain such rankings given more cutbacks planned for next year.

Friday, August 13, 2010

From Clare to India: EJ Butler "The Father of Indian Plant Pathology"

Born on this day in 1874, Edwin John Butler had a remarkable career which saw the Irishman traveling the globe and becoming a plant pathologist of international renown.

Butler was born in Kilkee, Co. Clare where his father was the local Magistrate. He studied medicine at Queen’s College Cork (now University College Cork) and graduated in 1898.

In Cork, he came under the influence of Prof. Marcus Hartog who was Professor of Natural History and later Professor of Zoology at the college. Hartog was interested in the mechanics of Saprolegnia, a genus of water-moulds which he collected from ponds including that in the lower grounds of the college (where the Glucksman Gallery now stands). Butler began to use similar techniques to study the neighbouring genus Pythium.

Butler went on to study in Paris and London before being appointed as Imperial Mycologist to India in 1906. His work on aquatic Phycomycetes in India as well as his classical studies on the diseases of palms and sugarcane, on wilt of pigeon peas, on wheat rusts, on downy mildews and much more mean that he is regarded as the “Father of Indian Plant Pathology”. He was responsible for categorising nearly 150 species of plant pathogenic fungi.

In 1918, he published ‘Fungi and Disease in Plants’ on Indian plant diseases. He later adapted this book for a European audience and ‘Plant Pathology’ was published a number of years after his death in collaboration with S.G. Jones. It was the classic plant pathology textbook of its time.

Butler left India in 1921 and took up Directorship of the newly established Imperial Bureau of Mycology at Kew, London where he continued his work and became a distinguished figure in the world of plant pathology; travelling widely and founding a number of new journals.

The plaque awaiting installation at Kilkee Library
The Imperial Bureau of Mycology later formed part of the Commonwealth Agricultural Bureau which is now known as CABI and celebrated its centenary in 2010.

Butler was Knighted in 1939. In Butler's obituary, EW Mason notes that

"his most striking characteristic was perhaps his immense interest in fungi both as fungi and as the causal organisms of disease in plants, and coupled with this his power of transferring that interest to botanical and lay minds alike. His lifelong habit of wide and deep reading, linked with his accumulated personal experience, enabled him to present problems in their correct perspective and to recommend the line of attack that should best deserve success." (Mason, 1943)

Sir Edwin John Butler died of influenza on April 4th, 1943 in Surrey. He is commemorated by a plaque at Kilkee Library, Co. Clare (which is awaiting installation) as well as the Butler Medal which is awarded by the Society of Irish Plant Pathologists to individuals who have made a significant contribution to the field. The Butler Building at University College Cork was built in 2000 and is also named in his honour.

Friday, August 6, 2010

UCC scientists tag jellyfish for first time

Irish researchers have managed to successfully track five Lion’s Mane Jellyfish!

As it had never been done before, attaching a tag to a Lion’s Mane was an extremely difficult and dangerous task. Eventually we found some way of attaching the tag to the underside of the jellyfish in amongst the hundreds of meter long tentacles”, explained Dr Tom Doyle, Coastal Marine Resources Centre, Environmental Research Institute, University College Cork (UCC).

Dr Doyle is a member of a group of researchers involved in The EcoJel Project - a four year project funded by the European Union Regional Development Fund (ERDF) under the Ireland Wales Programme 2007-2013 - Interreg 4A. EcoJel is a collaboration between University College Cork and Swansea University (Wales) and aims to assess the opportunities and detrimental impacts of jellyfish in the Irish Sea.

During the last few weeks, the researchers have been investigating the behaviour of the Lion’s Mane Jellyfish in Dublin Bay by attaching tags to their underside. Tracking these jellyfish is one of the only ways we can learn how much time they spend at the surface and whether or not they are residents or just passing through. These questions are important to answer as many bathers and open water swimmers in the Dublin area have been badly stung during the last few years and more recently in the last few weeks. Indeed, a bad encounter with a Lion’s Mane may result in severe pain for 5 or 6 hours, weeping skin and back spasms.

With the help/support of Ocean Divers in Dun Laoghaire, the researchers have now followed five individuals for up to eight hours. All individuals were tagged near the famous Forty Foot bathing spot and depending on the tide (ebb or flow), the jellyfish either went north or south along the coast. One jellyfish hugged the coastline from the Forty Foot to Bullock Harbour and along to Sorrento Point never moving more than 20 metres from shore. Another jellyfish went past the entrance to Dun Laoghaire Harbour and on towards Seapoint before heading south again with the ebbing tide.

This is a great success as only three weeks ago we had no idea of where they went and how they behaved. We now know that they these jellyfish are residents, moving about with the ebb and flow of the tide. As the jellyfish are now beginning to wash up in large numbers (they are dying off) we have stopped tagging until early next year,” said Dr Doyle.

This story originally appeared at UCC.ie
Visit www.jellyfish.ie for more.

Monday, July 19, 2010

Robert Gibbings (1889-1958)

Robert Gibbings
recent post on coral reefs led me to pick up a book by one of Ireland's best naturalists, writers and artists. In his book Blue Angels and Whales, Robert Gibbings describes the slow development of a reef as follows:
"Though it may take seven thousand years for some of the slower-growing corals to build a reef a hundred and fifty feet in depth, or perhaps a quarter of that time for some of the quicker-growing species to achieve the same result, nevertheless the activity goes on unceasingly.
And it is not only the exuberant growth of the living polyp which, ramifying everywhere, builds up these great structures. It is the dead coral also. broken by the waves and reduced to powder by boring molluscs and worms, this serves as cement to bind the whole together; and, burying themselves in it, there are shell-fish who in turn contribute their shells to the general structure. Over it all is deposited a gentle rain of sediment from the seawater. One day, when the living rock has reached the surface, a floating coco-nut will be arrested in its travels and, taking root, will throw up its leaves. Then begins another cycle. The leaves of the tree will fall and rot, forming humus, and in this humus other seeds, borne by the sea and wind, will take root. They in their turn will die and form further soil, and so a new world will come into being on which all the romance and tragedy of human life will find a setting."
Robert Gibbings was born in Cork in 1889, the son of a Church of Ireland minister. His mother was the daughter of Robert Day, a noted Cork businessman and importantly, a collector of art and cultural objects from all over the world. Gibbings undoubtedly came under Day's influence in his formative years: Myrtle Hill, the Day family's home in Cork was full of strange objects, from Celtic gold torcs to spears from the South Sea Islands.

Gibbings enrolled in University College Cork to study medicine in 1907. In Lovely is the Lee he notes that his time at UCC was not always as successful as it might have been:
"It wasn't that there was any ill will between us (the professors at the college), it was just that they couldn't agree with my answers to their questions. The professor of zoology* lamented that I seemed more interested in the outside than the inside of a rabbit."
*Probably Prof. Marcus Hartog at the time.

Engraving from 'Beasts and Saints'
Gibbings left UCC inside three years, having persuaded his parents that art rather than medicine was his calling. He proceeded to study art in Cork before moving to London to the Slade School in 1911. 

By 1914 he was on the move again, this time enlisted with the 4th Battalion Royal Munster Fusiliers. He survived a bullet in the neck at Gallipoli before being stationed back in Cork (at Bere Island) and Dublin. A posting to Salonika finished his military career and he was invalided out of the army in 1919.

Gibbings had a life-time interest in wood engravings and helped found the Society of Wood-Engravers. For the next few years, he took on a large number of small commissions, producing wood engravings and prints for advertising and the publishing industry.

Engraving from 'Blue Angels &Whales'
Around 1923, Gibbings became the owner of a small printing works, Golden Cockerel Press following the loan of one thousand pounds from a friend, Hubert Pike, a director of the Bentley Motor company. Gibbings and his new wife Moira set about reviving the fortunes of the struggling press with the aid of Eric Gill, another noted artist, sculptor and typeface designer.

By all accounts, life at the press was unconventional, to say the least, with "dancing and games in the nude" being a common pastime. Gibbings had a lifelong interest in naturism.

In 1926, another publisher sent Gibbings to Tahiti to work with an author and to illustrate his books. However, when the writer subsequently withdrew from the project, Gibbings added his own words to his illustrations and had the books published anyway. The Seventh Man and Iorana were the result.

In the early 1930's the press was sold and Gibbings divorced his first wife and so began a rather bleak time for the artist.

By 1937 he was teaching at Reading University but still struggling to make ends meet. He had two daughters with a new wife, Elizabeth Empson however this marriage soon began to falter. Elizabeth's sister Patience was later to become his secretary and aide.

After this period, Gibbings seems to have made a concerted effort to concentrate on both his teaching and his writing.

Gibbings diving in Bermuda
Blue Angels and Whales was based upon his diving experience in both Bermuda and at the Red Sea.

At the Bermuda Marine Research Station he borrowed their primitive diving helmet (pictured) and hand operated air-pump and set about observing underwater life, a subject he had become fascinated with. The diving was not without its dangers as he notes:

"The pressure of the air within the helmet is kept up by the pump, operated from the launch overhead. Provided the man at the job does not go to sleep in the sun, there is sufficient pressure to prevent the water rising above chin level."
Using sheets of Xylonite, Gibbings was able to draw under water using an adapted pencil (sticks of graphite encased in rubber tubing).

Throughout Gibbings books, whether travel related or on natural history, he takes time to recount events in his journey which seemingly led him to meet a wonderful array of humorous and interesting local characters. For example, on a steamer from Marseilles to Port Said, Egypt he notes a meeting with

"a fanatical evangelist with a lovely wife. He has tried to convert me to his beliefs, I have tried to convert her to mine, so far, no score on either side."
Clownfish by Gibbings, from 'Blue Angels & Whales'
Gibbings was headed towards the Marine Research Station at Hurghada, run by the University of Egypt. The station had diving gear similar to Bermuda's and the artist made full use of it. Of the now famous Clownfish (of Finding Nemo fame) he writes:

"In among the crevices of the dead coral were giant anemones, among whose tentacles might be discovered a small fish marked with conspicuous white bars across its bronze body, which, either by long habit or by ‘gentleman's agreement' had gained immunity from the stinging cells of its host. Living as it does under cover of such a battery, it achieves a greater security from its enemies than it would have if dependent on its own resources. In order to repay the hospitality granted, it makes it its business to dart from cover and endeavour to lure or drive any passing stranger within reach of the tentacles. Should it be successful there is no lack of reward in the crumbs that fall from its host's table."
After his return to the UK, the author became further interested in rivers and built a boat (The Willow) in which he set about travelling down the Thames making notes on the passing wildlife. The outbreak of the second world war disrupted his Thames trip and he did some work designing camouflage for the Ministry of Defence - he had become intrigued by the use of colour as camouflage in nature, particularly in fish living on coral reefs.

When he resumed his boating he wrote another book, Sweet Thames Run Softly, supplemented by his wood engravings. More travel books were to follow, often based about rivers: Coming down the Wye, Coming down the Seine, Sweet Cork of Thee and Lovely is the Lee. All of the books are charming mixtures of humour, natural history, science, geography, social observation and old tales gleaned from talkative locals. 

These books were all hugely successful and meant Gibbings was financially successful for the first time in his life. With his new-found wealth, the set off on another tour of the Pacific where he wrote and illustrated Over the Reefs.

Gibbings' last book, Till I End my Song, contains many reminiscences of his long and productive life. He died of cancer in January 1958.

The attraction of Gibbings' books is their easy mixture of science and natural history alongside a wicked sense of humour and fun. Much like the rivers he loved, none of his books are in a hurry to get anywhere. As one reviewer notes, "they mostly tend to meander in and out of one anecdote after another while heading towards the main focus".

Many of Gibbings' books are readily available having been reprinted extensively. This author has in his possession a much-prized first edition of Sweet Cork of Thee, signed by the author.

In later life, Gibbings was a familiar sight and sound on BBC TV and Radio and David Attenborough cites him as one of the formative influences on his own carreer. A Pathe newsreel featuring Gibbings can be viewed below.

Robert Gibbings was unique: an artist, writer and scientist; one of Ireland's greatest artists and a man with an extraordinary thirst for life.

His biographer, Martin Andrews, sums up the man as follows:
"But above all it was in his observation of nature and his descriptions of the mood and atmosphere of the open air and the landscape, ranging from the evocation of a dramatic sunset to the detail of a dewdrop on a blade of grass, that his writing was at its best. His style was not that of the intellectual. It came from the spirit, a mixture of poetic evocation, intense observation, factual detail and, above all, a sense of enjoyment and love of life."

ROBERT GIBBINGS ARTIST



Further Reading:
Listen to Martin Andrews, Reading University talk about Gibbings and how he re-discovered one of Gibbings' first pieces of sculpture here.

Thursday, June 10, 2010

Cork archaeologist finds world's oldest shoe

University College Cork (UCC) archaeologist, Dr Ron Pinhasi, and a team of international archaeologists discovered the world's oldest leather shoe in a cave in Armenia. The perfectly preserved shoe is 1,000 years older than the Great Pyramid of Giza in Egypt and 300 years older than Newgrange, Co Meath.
You can see the shoe, where it was found and what a modern-day reconstruction would look like in this clip.


Wednesday, April 21, 2010

In Search of Greatness

There has been much debate in Irish scientific circles lately as to why no scientists had made it into RTE's much hyped list of the Greatest Irish People. I've made the point that instead of bemoaning the fact that the public have snubbed us scientists in favour of some worthy and some (arguably) less worthy individuals, Irish science should be asking itself why it has come to this?

Why don't the general public consider Irish scientists worthy of this title? Do they know enough about them? Do they really value their work?

On the back of this assault on our collective egos, Science.ie launched a poll to find the Greatest Irish Scientist. Robert Boyle (of Boyle's Law fame) was the most popular with almost two thirds of the vote (32.2%). William Rowan Hamilton (21.2%) and Ernest Walton (17.8%), a mathematician and nuclear physicist respectively, came in next.

The full top ten is as follows:

Science.ie poll results – top 10 Irish scientists:

1. Robert Boyle, who turned chemistry into a science
2. William Rowan Hamilton – the algebra he invented in 1843 helped to put a man on the Moon more than a century later
3. Ernest Walton, whose pioneering work began the atomic era
4. Kathleen Lonsdale, the X-ray crystallographer who revealed the structure of benzene and diamond
5. Dorothy Price, instrumental in the fight against tuberculosis, introducing the BCG vaccine to Ireland in the 1930s
6. John Tyndall, the first person to answer the question “Why is the sky blue?” successfully
7. Harry Ferguson, who revolutionised farming when he invented the modern tractor
8. Sir George Gabriel Stokes, for his important contributions to fluid dynamics, optics and mathematical physics, including Stokes’ theorem
9=. Fr Nicholas Callan, who invented the modern induction coil, still used in car ignitions
9=. Charles Parsons, inventor of the steam turbine
9=. William Thompson, who formulated the first and second Laws of Thermodynamics

No room it seems for George Boole, Br. James Burke or Br. John Philip Holland.

Boole was the first Professor of Mathematics at Queen's College Cork (now UCC), where the library is now named in his honour. He invented Boolean logic which formed the basis of modern computer logic and makes him, in hindsight, a founder of modern computer science.

Burke was a Christian Brother who taught at the North Monastery in Cork City and was renowned for his work in developing practical scientific and technical education in Ireland during the late 19th century. Amongst his achievements includes bringing electric light to Cork in 1877, two years before Thomas Edison invented the electric bulb. He was a pioneer and advocate for practical, scientific education in Ireland and represented Ireland at the World's Fair in St Louis, Missouri in 1904.

Writing in The Glamour of Cork, Daniel Lawrence Kelleher (1919) describes an aging Burke as:
"This big, slow-footed, heavy, smiling, half-blind old man [who] has put into practice the most enlightened methods of education.
"Behold him in his class, a combination and anticipation of Montessori, Pearse and a hundred others, a curious wheedling old fellow, the father, uncle and guardian of his pupils, and no master at all in the narrow sense; or another time at the Trades Hall talking to workers back to childhood by his overflowing interest.
"A teacher out of a million, his lesson a preparation for life rather than for any examination test, his shining spirit a light always for any who saw the flame of it, alive".

Holland, a Christian Brother colleague of Burke at the North Monastery, is credited with developing the first submarine to be commissioned by the US Navy (USS Holland), and the first Royal Navy submarine- the Holland 1. The first image in this post shows Holland standing at the hatch of a submarine.

Thanks to North Monastery Past Pupils Union for permission to use photos from their collection. Expect to hear much more about both Burke and Holland in 2011 when the North Monastery schools celebrate their bicentennial.

Friday, February 19, 2010

World First for UCC as Students raise Green Flag

University College Cork (UCC) today (February 19th 2010) became the first 3rd level educational institution in the world to be accredited with the prestigious international ‘Green Flag’ award. 
 
The award, presented by Minister John Gormley, on behalf of An Taisce, to UCC President Dr Michael Murphy, is a direct result of the Green-Campus programme, a student-led initiative undertaken by UCC students and staff over the last 3 years.
 
The Green-Campus programme, operated in Ireland by An Taisce, has seen the University save €300,000 in waste management costs, reduce waste to landfill by nearly 400 tonnes and improve recycling from 21% to 60%.  Furthermore, UCC has conserved almost enough water this year to fill the equivalent of the Lough of Cork.

"our first action was to put on overalls and dive into the skips"The first step was for the students to establish a Green-Campus Committee, in conjunction with the Buildings & Estates Department and academic staff. An environmental review followed.  “There were absolutely no recycling facilities for students walking on the campus”, recalls Maria Kirrane, a student representative on the committee. “In fact, our very first action was to put on overalls and literally dive into the skips to see exactly what types of waste were being disposed of!”

In addition to staff recycling systems that previously existed, new recycling facilities for students are now available in front of the lecture halls, and in the canteens, where the staff is trained in minimising waste.  Students in lecture theatres and laboratories are alerted to turn off lights and electrical equipment. College maintenance vehicles are now running on biodiesel. Carpooling has been introduced to facilitate lifts to and from campus. Enhanced Park & Ride and bike parking areas are designed to encourage more sustainable travel.  Each year the Students Union holds a Green Awareness Week on campus, where real actions are supplemented by academic talks on environmental sustainability.

 “It is quite a leap, transforming the Green-Schools programme, geared for the typical school of a few hundred students, to a complex campus of 130 acres, 16,000 students and almost 3,000 staff,” explained Dr Michael John O’Mahony of An Taisce. “In population terms UCC is bigger than your average Irish town, so bringing together all the necessary parties and practices to develop it into a sustainable Green-Campus was a real challenge.”

UCC President, Dr Michael Murphy said it is a source of great pride to the university, its staff and its students, that UCC has become the first third level institution in the world to be awarded the designation. “It is a wonderful achievement to have innovative thinkers among the staff and students in UCC all working towards the same objective. 

“It was these students, who had been part of the Green Flag programme at secondary school level, who believed from the outset that the concept could be transferred successfully to an institution of UCC’s size and that by raising awareness throughout the university, we could, together, make a real difference.”

Mark Poland, Director of Building and Estates, added: “This initiative has provided a great forum for environmentally-conscious members of staff and students to assist in how we tackle our environmental responsibilities as a university community.”

An Taisce, on behalf of the Foundation for Environmental Education (FEE), granted the international accreditation after a rigorous assessment by an expert panel. UCC is now looking to build on the award. “We’d like to make it easier for students to cycle to college, possibly through a bike purchase scheme”, says Maria Kirrane. “Also, while UCC is a beautiful campus, many of the plants here are non-native.  We’re looking to address biodiversity on campus.”  In addition a programme to convert the college food waste into compost has commenced.

“There is a wide of range of environmental management programmes that a third level college could undertake. However, the Green Campus programme is unique because it is student-led and they are the key decision makers,” says Jan Eriksen, President of FEE. A number of other 3rd level institutions in Ireland will be applying for a Green-Flag shortly.

"it is critical that the chain not be broken"“This is about more than making a campus green”, continues Michael John.  “Over the past 14 years, hundreds of thousands of students in Ireland have been brought up with Green-Schools, sometimes starting at pre-school, through primary schools and then second level.  It is critical that the chain not be broken once they complete the Leaving Cert.  It needs to continue into 3rd level, and from there into their professional as well as their personal lives so that they become life-long educators and ambassadors of sustainable living.”

This story was originally published on the University College Cork website.

Friday, February 5, 2010

Cork Scientists Make Progress in Battle Against Prostate Cancer


Scientists based at the Cork Cancer Research Centre (CCRC) at UCC have announced details of a vaccine that they are working on that allows a person's own immune system fight off prostate cancer cells.

Prostate cancer causes 700 deaths each year and arises when cells of the prostate gland (part of the male reproductive system) change and disrupt the proper functioning of the gland. It is known that the risk of getting prostate cancer increases with age, family history of prostate cancer, your ethnicity, a diet heavy in red meat and fat and light on green vegetables.

For example, according to the Irish Cancer Society, most men diagnosed with prostate cancer are over 50. African-American and African-Caribbean men are also more at risk than other groups.

The genetic component of prostate cancer is interesting. A study of identical twins in Sweden, Denmark and Finland in 2000 have shown that 40 % of prostate cancer risk can be explained by inherited factors.

The study looked at historical data on a total of about 45,000 pairs of twins and determined how many were affected by a variety of cancers, including prostate cancer and whether or not their twin was also affected. Such twin studies are very important for understanding what role our genetics plays in disease development as well as the distribution of various traits and characteristics.

As identical twins are genetically identical, they are a very important source of knowledge for researchers.

Now, the researchers at the CCRC have developed a prostate cancer vaccine using DNA to stimulate the individuals immune system and prime it for future attack by cancerous cells. In simple terms, it gives the body a 'heads-up' as to what a prostate cancer cell might look like and ensures that the person's immune system is ready to fight it.

Dr. Mark Tangney and his team have published the research in the peer-reviewed journal Genetic Vaccines and Therapy under the title, Optimised electroporation mediated DNA vaccination for treatment of prostate cancer.

The vaccine treatment was shown to significantly delay the appearance of further tumours after the main prostate tumour had been removed by surgery and led to prolonged survival mice when the vaccine was tested on them. The team have also established that a four-dose application of the vaccine provides the highest protection from tumour protection.

The vaccine is yet to be tested in pre-clinical trials and it may be another 7 or 8 years before it is available to patients.

Monday, January 18, 2010

Cork Science Lectures


For a number of years now, the Science Public Lecture Series at University College Cork has been organised by that college's Public Awareness of Science Office headed up by the well known academic and columnist William Reville.

This year is no different, with the lecture series having kicked off on the 6th of January. The lectures are an exciting opportunity to listen to experts speak on a variety of important scientific topics with lectures designed for a public audience.

Topics range from the Big Bang Theory to 'The God Delusion'. Admission is free and lectures are open to everyone!


6th January~ Mr. Noel Brett~ The Problem with Mathematics

13th January~ Ms. Claire Feeley~ The Cinema as Laboratory

20th January~ Prof. J. Ray Bates~ The Greenhouse Effect and Global Warming

27th January ~ Prof. Paul McSweeney~ From Molecules to Milk

3rd February~ Dr. Edmond Byrne~ Change or Collapse? Transforming Society and the New Engineer

10th February~ Dr. Dylan Evans~ Risk Intelligence- How expert gamblers can teach us all to make better decisions

17th February~ Dr. Sharon Murphy~ Ethics, Technological Interventions and End-of-Life Choices

24th February~ Dr. Fatima Gunning~ What Lies Beneath? How photonics can save the internet from the bandwidth crunch

3rd March~ Dr. Cormac O'Raifeartaigh~ The Big Bang, the Large Hadron Collider and the God Particle

10th March~ Joe Egan ~A Theological Critique of 'The God Delusion'

All of the lectures take place in Boole 4 lecture theatre in the Boole Lecture Theatre Complex on the UCC campus at 8pm.
Further information:
http://understandingscience.ucc.ie

Friday, November 20, 2009

Act of Man or Act of God?


I survived the Cork floods 2009!

After a valiant effort to get to work this morning, I had to turn back due to the unprecedented levels of water around the western suburbs of Cork City.Prolonged levels of rain in the last week or so, combined with the relaease of water from Innascarra dam and high tides in Cork harbour led to some of the worst flooding in years in the City.

The Mercy hospital was forced to implement its emergency plan in the early hours of Friday morning. This meant patients on lower floors were moved to higher floors in the complex which sits beside the River Lee. Nearby, University College Cork bore the brunt of the floods with their iconic Glucksman Gallery, the newly opened Western Gateway Building (pictured) and the research-active Tyndal Centre were all under water along with many of UCC's low-lying buildings and student accomodation.

With flooding in Galway, Fermoy, Bandon and Clonakilty, it begs the question why such flooding is becoming so prevalent. The immediate conclusion which seems to be jumped at is the involvment of 'climate change' or 'global warming' in these flooding events.

There's no doubt that the result of climate change will be wetter conditions in this country along with an increase in the rate and intensity of severe weather conditions such as we faced in the last few days.That being said, I don't believe for a moment that the current events are directly related to climate change.

Flooding events are relatively common in this country and they have been recorded for centuries. It is the extent and intensity of development which has now brought us closer to flood plains which, by their nature are prone to flooding.

For example, the Glucksman Gallery and Gateway Building in UCC, which are currently under water, were built on land which were well known to flood regularly. For that reason, flood defences were in-built to the buildings. Despite this, I hear that the flood defences in the Gateway building (open just a few short months) were entirely overwhelmed.

Just this week, engineers have warned that Cork and Dublin could be 'uninhabitable'in the next century. In their report- 'Ireland at Risk', the Irish Academy of Engineers (IAE) said that flooding events of a magnitude only experience currently every 100 years, could occur every 5 years.

IAE president, Michael Hayden points to Hurricane Katrina in the US "for an example of how climate change coupled with poor planning and zoning decisions can lead to social and economic disaster”. “If we move now, significant economic benefits will accrue”, according to Michael Hayden, “but it we do ‘too little too late’ we risk social and economic disaster”.

With reports like this coming think and fast and the area of climate change about to to come into sharp focus with the Copenhagan Conference in December, it's inevitable that such flooding events that we are seeing now will be blamed on climate change. In the future, I have no doubt that climate change will cause increases in these types of events, there is less evidence that these meterological events are currently global warming related.

Nonetheless, the importance of fighting climate change has become a relevant issue for many strands of society.

Former US president Al Gore has been at the forefront in publicising the need for action on climate change since his award winnin documentary 'An Inconvenient Truth' in 2006. In his latest book 'Our Choice: A Plan to Solve the Climate Crisis' the climate campaigner says that laying out the facts is just not enough and he has begun to appeal to peoples moral and religiois duty to protect the planet.

Speaking in a recent Newsweek interview, Gore described his work with religious organisations who were eager to contribute to the fight against climate change: "I've done a Christian [-based] training program; I have a Muslim training program and a Jewish training program coming up, also a Hindu program coming up. I trained 200 Christian ministers and lay leaders here in Nashville in a version of the slide show that is filled with scriptural references. It's probably my favourite version, but I don't use it very often because it can come off as proselytising."

In Ireland, the Catholic Bishop's Conference have just issued a pastoral reflection on climate change which has been made available on their website and in catholic churches throughout the country.

'The Cry of the Earth' talks of climate change as being "one of the most critical issues of our time" and having consequences "for the future of every person and every form of life on the earth."

The publication also quotes Pope Benedict as saying that an shift in mentality "can lead to the adoption of new lifestyles in which the quest for truth, beauty, goodness and communion with others for the sake of common growth are the factors which determine consumer choices, savings and investments."

In a time when science and religion often clash unnecesarily, it's good to see all strands of society pulling in the same direction. One thing's for sure, those effected by this most recent flood are surely cursing this particular 'act of god'.


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